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Recent Publications

2012

Srinivasan, J., von Reuss, S.H., Bose, N., Zaslaver, A., Mahanti, P., Ho, M.C., O’Doherty, O. Edison, A. S. Sternberg, P.W. and Schroeder, F. C. (2012).  A modular library of chemical signals regulates social behaviors in Caenorhabditis elegans. PLoS-Biology, in press.

Dillman, A. R., Chaston, J. M., Adams, B. J., Ciche, T. A., Goodrich-Blair, H., Stock, S. P., and Sternberg, P. W.  (2012). An entomopathogenic nematode by any other name. PLoS-Pathogens, in press.  (Opinion)

2011

Jex, A. R., Li, B., Young, N. D., Hall, R. S., Yang, L., Liu, S., Xun, X., Xiong, Z., Chen, F., Wu, X., Zhou, G., Fan, X., Campbell, B. E., Cantacessi, C. Schwarz, E. M. Ranganathan, S., Geldhof, P., Nejsum, P., Sternberg, P. W., Wang, J. Yang, H.  and Gasser, R. B. (2011).  The Ascaris suum genome. Nature. 2011 Oct 26;479(7374):529-33. doi: 10.1038/nature10553.. PMID:22031327.

Zaslaver, A., Baugh, L. R. and Sternberg. P. W. (2011). Metazoan operons accelerate recovery from growth arrested states. Cell 145(6):981-92. PMID: 21663799. 


Narayan, A., Laurent, G., and Sternberg, P.W. (2011). Transfer characteristics of a thermosensory synapse in Caenorhabditis elegans. Proc Natl Acad Sci U S A. 108:9667-72. PMID: 21606366; PMCID: PMC3111291.


Rangarajan, A., Schedl, T., Yook, K., Chan, J., Haenel, S., Otis, L., Faelten, S., DePellegrin-Connelly, T., Isaacson, R., Skrzypek,
Marygold, S. J., Stefancsik, R., Skrzypek,, M.S. Cherry, J. M., Sternberg, P. W., and Müller, H.-M. (2011).  Toward an interactive article: integrating journals and biological databases. BMC Bioinformatics 12:175  doi: 10.1186/1471-2105-12-175.

Schindelman, G., Fernandes, J. S., Bastiani, C. A., Yook, K.  and Sternberg. P. W. (2011). Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community.  BMC Bioinformatics 12:32. doi:10.1186/1471-2105-12-32. PMCID: PMC3039574


Baugh, L.R., Kurhanewicz, N., and Sternberg, P.W. (2011). Sensitive and precise quantification of insulin-like mRNA expression in Caenorhabditis elegans. PLoS One 6(3):e18086. PMID: 21445366; PMCID: PMC3062572.  


Kaplan, F., Srinivasan, J., Mahanti, P., Ajredini, R., Durak, O., Nimalendran, R., Sternberg, P.W., Teal, P.E., Schroeder, F.C., Edison, A.S., Alborn, H.T. (2011). Ascaroside expression in Caenorhabditis elegans is strongly dependent on diet and developmental stage.  PLoS One 6(3):e17804. PMID: 21423575; PMCID: PMC3058051. 


Chung, K., Zhan, M., Srinivasan, J., Sternberg, P. W., Gong, E., Schroeder, F., and Lu, H. (2011). Microfluidic chamber arrays for whole-organism high-throughput chemical screening.   Lab Chip. 2011 Nov 7;11(21):3689-97. Epub 2011 Sep 20.
PubMed PMID: 21935539.

Yook, K., Harris, T. W., Bieri, T., Cabunoc, A., Chan, J.,. Chen, W.J., Davis, P., de la Cruz, N., Duong, A., Fang, R., Ganesan, U., Grove, C., Howe, K., Kadam, S., Kishore, R., Lee, R., Li, Y., Muller, H.-M., Nakamura, C., Nash, B., Ozersky, P., Paulini, M., Raciti, D., Rangarajan, A., Schindelman, G., Shi, X., Schwarz, E.M., Tuli, M.A., Van Auken, K., Wang, D., Wang, X., Williams, G., Hodgkin, J., Berriman, M., Durbin, R., Kersey, P., Spieth, J., Stein, L., Sternberg, P.W. (2012).
 WormBase 2012: more genomes, more data, new website. 
Nucleic Acids Research 2011, doi: 10.1093/nar/gkr95
   WormBase

Johnston M, Andrews BJ, Hawley RS, Sternberg PW, Hieter P, Schedl T. G3, GENETICS, and the GSA: Two Journals, One Mission. Genetics 189(1):1-2. PubMed PMID: 21908741; PubMed Central PMCID: PMC3176113.
  G3

2010

Hu, M., He, L., Campbell, B.E., Zhong, W., Sternberg, P.W., and Gasser, R.B. (2010). A vacuolar-type proton (H(+)) translocating ATPase alpha subunit encoded by the Hc-vha-6 gene of Haemonchus contortus. Mol. Cell. Probes [Epub ahead of print] PubMed PMID: 20362051.

Hu, M., Lok, J.B., Ranjit, N., Massey, H.C., Jr., Sternberg, P.W., and Gasser, R.B. (2010). Structural and functional characterisation of the fork head transcription factor-encoding gene, Hc-daf-16, from the parasitic nematode Haemonchus contortus (Strongylida). Int. J. Parasitol. 40, 405-415.

Pang, S., Cui, X., DeModena, J., Wang, Y.M., Sternberg, P., and Yang, C. (2010). Implementation of acolor-capable optofluidic microscope on a RGB CMOS color sensor chip substrate. Lab Chip 10, 411-414.

Rivard, L., Srinivasan, J., Stone, A., Ochoa, S., Sternberg, P.W., and Loer, C.M. (2010) A comparison of experience-dependent locomotory behaviors and biogenic amine neurons in nematode relatives of Caenorhabditis elegans. BMC Neurosci. 11, 22.

Inoue, T. and Sternberg, P.W. (2010). C. elegans BED domain transcription factor BED-3 controls lineage-specific cell proliferation during organogenesis. Dev. Biol. 338, 226-236.

Hu, M., Zhong, W., Campbell, B.E., Sternberg, P.W., Pellegrino, M.W., and Gasser, R.B. (2010). Elucidating ANTs in worms using genomic and bioinformatic tools -- biotechnological prospects? Biotechnol Adv. 28, 49-60.

Gene Ontology Consortium (2010). The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res. 38, D331-D335.

Harris, T.W., Antoshechkin, I., Bieri, T., Blasiar, D., Chan, J., Chen, W.J., De La Cruz, N., Davis, P., Duesbury, M., Fang, R., Fernandes, J., Han, M., Kishore, R., Lee, R., Mülle,r .H., Nakamura, C., Ozersky, P., Petcherski, A., Rangarajan, A., Rogers, A., Schindelman, G., Schwarz, E.M., Tuli, M.A., Van Auken, K., Wang, D., Wang, X., Williams, G., Yook, K., Durbin, R., Stein, L.D., Spieth, J., and Sternberg, P.W. (2010). WormBase: a comprehensive resource for nematode research. Nucleic Acids Res. 38, D463-D467. WormBase

2009

Seah A, Sternberg PW. The roles of EGF and Wnt signaling during patterning of the C. elegans Bgamma/delta Equivalence Group. BMC Dev Biol. 2009 Dec 31;9:74.

Adhikari BN, Lin CY, Bai X, Ciche TA, Grewal PS, Dillman AR, Chaston JM, Shapiro-Ilan DI, Bilgrami AL, Gaugler R, Sternberg PW, Adams BJ. Transcriptional profiling of trait deterioration in the insect pathogenic nematode Heterorhabditis bacteriophora. BMC Genomics. 2009 Dec 15;10:609.

Kato M, Sternberg PW. The C. elegans tailless/Tlx homolog nhr-67 regulates a stage-specific program of linker cell migration in male gonadogenesis. Development. 2009 Dec;136(23):3907-15.

Klerkx EP, Alarcón P, Waters K, Reinke V, Sternberg PW, Askjaer P. Proteinkinase VRK-1 regulates cell invasion and EGL-17/FGF signaling in Caenorhabditis elegans. Dev Biol. 2009 Nov 1;335(1):12-21.

Cantacessi C, Zou FC, Hall RS, Zhong W, Jex AR, Campbell BE, Ranganathan S, Sternberg PW, Zhu XQ, Gasser RB. Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform. Mol Cell Probes. 2009 Oct;23(5):205-17.

Broitman-Maduro G, Owraghi M, Hung WW, Kuntz S, Sternberg PW, Maduro MF. The NK-2 class homeodomain factor CEH-51 and the T-box factor TBX-35 have overlapping function in C. elegans mesoderm development. Development. 2009 Aug;136(16):2735-46.

Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW. Semi-automatedcuration of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. BMC Bioinformatics. 2009 Jul 21;10:228.

Cantacessi C, Campbell BE, Visser A, Geldhof P, Nolan MJ, Nisbet AJ, Matthews JB, Loukas A, Hofmann A, Otranto D, Sternberg PW, Gasser RB. A portrait of the "SCP/TAPS" proteins of eukaryotes -- developing a framework for fundamental research and biotechnological outcomes. Biotechnol Adv. 2009 Jul-Aug;27(4):376-88.

Reference Genome Group of the Gene Ontology Consortium. The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species. PLoS Comput Biol. 2009 Jul;5(7):e1000431.

Whittaker AJ, Sternberg PW. Coordination of opposing sex-specific and core muscle groups regulates male tail posture during Caenorhabditis elegans male mating behavior. BMC Biol. 2009 Jun 22;7:33.

Pungaliya C, Srinivasan J, Fox BW, Malik RU, Ludewig AH, Sternberg PW, Schroeder FC. A shortcut to identifying small molecule signals that regulate behavior and development in Caenorhabditis elegans. Proc Natl Acad Sci U S A. 2009 May 12;106(19):7708-13.

Bai X, Adams BJ, Ciche TA, Clifton S, Gaugler R, Hogenhout SA, Spieth J, Sternberg PW, Wilson RK, Grewal PS. Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1. BMC Genomics. 2009 Apr 30;10:205.

Baugh LR, Demodena J, Sternberg PW. RNA Pol II accumulates at promoters of growth genes during developmental arrest. Science. 2009 Apr 3;324(5923):92-4.

Giurumescu CA, Sternberg PW, Asthagiri AR. Predicting phenotypic diversity and the underlying quantitative molecular transitions. PLoS Comput Biol. 2009 Apr;5(4):e1000354.

Yu H, Seah A, Herman MA, Ferguson EL, Horvitz HR, Sternberg PW. Wnt and EGF pathways act together to induce C. elegans male hook development. Dev Biol. 2009 Mar 15;327(2):419-32.

Cantacessi C, Loukas A, Campbell BE, Mulvenna J, Ong EK, Zhong W, Sternberg PW, Otranto D, Gasser RB. Exploring transcriptional conservation between Ancylostoma caninum and Haemonchus contortus by oligonucleotide microarray and bioinformatic analyses. Mol Cell Probes. 2009 Feb;23(1):1-9.

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Last modified: January 5, 2012
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