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Recent Publications


Schwarz, E.M., Hu, Y., Antoshechkin, I., Miller, M.M., Sternberg, P.W., & Aroian, R.V. (2015). The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families. Nature Genetics

Zhu, X.Q., Korhonen, P.K., Cai, H., Young, N.D., Nejsum, P., von Samson-Himmelstjerna, G., et al. (2015). Genetic blueprint of the zoonotic pathogen Toxocara canis. Nature communications, 6, 6145

Bedbrook CN, Kato M, Ravindra Kumar S, Lakshmanan A, Nath RD, Sun F, et al. Genetically Encoded Spy Peptide Fusion System to Detect Plasma Membrane-Localized Proteins In Vivo. Chem Biol. 2015.

Breugelmans B, Ansell BRE, Young ND, Amani P, Stroehlein AJ, Sternberg PW, et al. Flatworms have lost the right open reading frame kinase 3 gene during evolution.             Scientific Reports. 2015;5.

Manosalva P, Manohar M, von Reuss SH, Chen S, Koch A, Kaplan F, et al. Conserved nematode signalling molecules elicit plant defenses and pathogen resistance. Nat Commun. 2015;6.

Mohandas N, Young ND, Jabbar A, Korhonen PK, Koehler AV, Amani P, et al. The barber's pole worm CAP protein superfamily - A basis for fundamental discovery and biotechnology advances. Biotechnol Adv. 2015.

Mok DZ, Sternberg PW, Inoue T. Morphologically defined sub-stages of C. elegans vulval development in the fourth larval stage. BMC Dev Biol. 2015;15:26. PMCID: 4464634.

Schwarz EM, Hu Y, Antoshechkin I, Miller MM, Sternberg PW, Aroian RV. Erratum: the genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families. Nat Genet. 2015;47(6):689.

Tyagi R, Joachim A, Ruttkowski B, Rosa BA, Martin JC, Hallsworth-Pepin K, et al. Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock. Biotechnol Adv. 2015.

Yuet KP, Doma MK, Ngo JT, Sweredoski MJ, Graham RL, Moradian A, et al. Cell-specific proteomic analysis in Caenorhabditis elegans. P Natl Acad Sci USA. 2015;112(9):2705-10. PMCID: 4352802.

Zaslaver A, Liani I, Shtangel O, Ginzburg S, Yee L, Sternberg PW. Hierarchical sparse coding in the sensory system of Caenorhabditis elegans. P Natl Acad Sci USA. 2015;112(4):1185-9. PMCID: 4313814.


Auguste, A.J., Kaelber, J.T., Fokam, E.B., Guzman, H., Carrington, C.V., Erasmus, J.H., et al. (2014). A newly-isolated reovirus has the simplest genomic and structural organization of any reovirus. Journal of virology

Bhowmik, S., Jones, D.H., Chiu, H.P., Park, I.H., Chiu, H.J., Axelrod, H.L., et al. (2014). Structural and functional characterization of BaiA, an enzyme involved in secondary bile acid synthesis in human gut microbe. Proteins, 82(2), 216-229.3992121

Breugelmans, B., Jex, A.R., Korhonen, P.K., Mangiola, S., Young, N.D., Sternberg, P.W., et al. (2014). Bioinformatic exploration of RIO protein kinases of parasitic and free-living nematodes. International journal for parasitology, 44(11), 827-836

Chen, Z.X., Sturgill, D., Qu, J., Jiang, H., Park, S., Boley, N., et al. (2014). Comparative validation of the D. melanogaster modENCODE transcriptome annotation. Genome Research, 24(7), 1209-1223.PMC4079975

Chiu, H.J., Grant, J.C., Farr, C.L., Jaroszewski, L., Knuth, M.W., Miller, M.D., et al. (2014). Structural analysis of arabinose-5-phosphate isomerase from Bacteroides fragilis and functional implications. Acta crystallographica. Section D, Biological crystallography, 70(Pt 10), 2640-2651.4188006

Cho, J.Y., & Sternberg, P.W. (2014). Multilevel Modulation of a Sensory Motor Circuit during C. elegans Sleep and Arousal. Cell, 156(1-2), 249-260.PMC3962823

Davenport, A.M., Collins, L.N., Chiu, H., Minor, P.J., Sternberg, P.W., & Hoelz, A. (2014). Structural and functional characterization of the alpha-tubulin acetyltransferase MEC-17. Journal of molecular biology, 426(14), 2605-2616.PMC4259157

Dillman, A.R., Cronin, C.J., Tang, J., Gray, D.A., & Sternberg, P.W. (2014). A modified mole cricket lure and description of Scapteriscus borellii (Orthoptera: Gryllotalpidae) range expansion and calling song in California. Environmental entomology, 43(1), 146-156

Flytzanis, N.C., Bedbrook, C.N., Chiu, H., Engqvist, M.K., Xiao, C., Chan, K.Y., et al. (2014). Archaerhodopsin variants with enhanced voltage-sensitive fluorescence in mammalian and Caenorhabditis elegans neurons. Nature communications, 5, 4894.PMC4166526

Harris, T.W., Baran, J., Bieri, T., Cabunoc, A., Chan, J., Chen, W.J., et al. (2014). WormBase 2014: new views of curated biology. Nucleic Acids Research, 42(Database issue), D789-793.PMC3965043

Iorizzo, M., Gao, L., Mann, H., Traini, A., Chiusano, M., Kilian, A., et al. (2014). A DArT marker-based linkage map for wild potato Solanum bulbocastanum facilitates structural comparisons between Solanum A and B genomes. BMC genetics, 15(1), 123.4240817

Jex, A.R., Nejsum, P., Schwarz, E.M., Hu, L., Young, N.D., Hall, R.S., et al. (2014). Genome and transcriptome of the porcine whipworm Trichuris suis. Nature Genetics, 46(7), 701-706.PMC4105696

Kato, M., Chou, T.F., Yu, C.Z., DeModena, J., & Sternberg, P.W. (2014). LINKIN, a new transmembrane protein necessary for cell adhesion. eLife, 3, e04449.4275582

Kowal, J., Chami, M., Baumgartner, P., Arheit, M., Chiu, P.L., Rangl, M., et al. (2014). Ligand-induced structural changes in the cyclic nucleotide-modulated potassium channel MloK1. Nature communications, 5, 3106.4086158

LeBoeuf, B., Correa, P., Jee, C., & Garcia, L.R. (2014). Caenorhabditis elegans male sensory-motor neurons and dopaminergic support cells couple ejaculation and post-ejaculatory behaviors. eLife, 3, e02938

Leighton, D.H.W., Choe, A., Wu, S.Y., & Sternberg, P.W. (2014). Communication between oocytes and somatic cells regulates volatile pheromone production in Caenorhabditis elegans. Proceedings of the National Academy of Sciences, 111(50), 17905-17910

Mangiola, S., Young, N.D., Sternberg, P.W., Strube, C., Korhonen, P.K., Mitreva, M., et al. (2014). Analysis of the transcriptome of adult Dictyocaulus filaria and comparison with Dictyocaulus viviparus, with a focus on molecules involved in host parasite interactions. International journal for parasitology, 44(3-4), 251-261.PMC4040346

Mao, Y., Van Auken, K., Li, D., Arighi, C.N., McQuilton, P., Hayman, G.T., et al. (2014). Overview of the gene ontology task at BioCreative IV. Database : the journal of biological databases and curation, 2014.4142793

Mason, L., Tribolet, L., Simon, A., von Gnielinski, N., Nienaber, L., Taylor, P., et al. (2014). Probing the equatorial groove of the hookworm protein and vaccine candidate antigen, Na-ASP-2. The international journal of biochemistry & cell biology, 50, 146-155

Peng, S.J., Harnod, T., Tsai, J.Z., Ker, M.D., Chiou, J.C., Chiueh, H., et al. (2014). Evaluation of subcortical grey matter abnormalities in patients with MRI-negative cortical epilepsy determined through structural and tensor magnetic resonance imaging. BMC neurology, 14, 104.4080585

Sapir, A., Dillman, A.R., Connon, S.A., Grupe, B.M., Ingels, J., Mundo-Ocampo, M., et al. (2014). Microsporidia-nematode associations in methane seeps reveal basal fungal parasitism in the deep sea. Frontiers in Microbiology, 5, 43.PMC3918590

Sapir, A., Tsur, A., Koorman, T., Ching, K., Mishra, P., Bardenheier, A., et al. (2014). Controlled sumoylation of the mevalonate pathway enzyme HMGS-1 regulates metabolism during aging. Proceedings of the National Academy of Sciences of the United States of America, 111(37), E3880-3889.PMC4169931

Shinya, R., Hasegawa, K., Chen, A., Kanzaki, N., & Sternberg, P.W. (2014). Evidence of Hermaphroditism and Sex Ratio Distortion in the Fungal Feeding Nematode Bursaphelenchus okinawaensis. G3-Genes Genomes Genetics

Sun, B., Rodriguez-Manzano, J., Selck, D.A., Khorosheva, E., Karymov, M.A., & Ismagilov, R.F. (2014). Measuring Fate and Rate of Single-Molecule Competition of Amplification and Restriction Digestion, and Its Use for Rapid Genotyping Tested with Hepatitis C Viral RNA. Angewandte Chemie, 126(31), 8226-8230.4116457

Tang, Y.T., Gao, X., Rosa, B.A., Abubucker, S., Hallsworth-Pepin, K., Martin, J., et al. (2014). Genome of the human hookworm Necator americanus. Nature Genetics, 46(3), 261-+.PMC3978129

Van Auken, K., Schaeffer, M.L., McQuilton, P., Laulederkind, S.J., Li, D., Wang, S.J., et al. (2014). BC4GO: a full-text corpus for the BioCreative IV GO task. Database : the journal of biological databases and curation, 2014.PMC4112614

Veesenmeyer, J.L., Andersen, A.W., Lu, X., Hussa, E.A., Murfin, K.E., Chaston, J.M., et al. (2014). NilD CRISPR RNA contributes to Xenorhabdus nematophila colonization of symbiotic host nematodes. Molecular microbiology, 93(5), 1026-1042.PMC4152777

Young, N.D., Nagarajan, N., Lin, S.J., Korhonen, P.K., Jex, A.R., Hall, R.S., et al. (2014). The Opisthorchis viverrini genome provides insights into life in the bile duct. Nature communications, 5, 4378.PMC4104445

Ghosh S, Sternberg PW. Spatial and molecular cues for cell outgrowth during C. elegans uterine development. Dev Biol. 2014;396(1):121-35.

Mohandas N, Jabbar A, Podolska M, Zhu XQ, Littlewood DT, Jex AR, et al. Mitochondrial genomes of Anisakis simplex and Contracaecum osculatum (sensu stricto)--comparisons with selected nematodes. Infect Genet Evol. 2014;21:452-62.

Mohandas N, Pozio E, La Rosa G, Korhonen PK, Young ND, Koehler AV, et al. Mitochondrial genomes of Trichinella species and genotypes - a basis for diagnosis, and systematic and epidemiological explorations. Int J Parasitol. 2014;44(14):1073-80.

Schwartz HT, Sternberg PW. Transgene-free genome editing by germline injection of CRISPR/Cas RNA. Methods Enzymol. 2014;546:441-57.  PMCID: PMC3813845.


Hsueh, Y.-P., Mahanti, P., Schroeder, F. C., and Sternberg, P.W. (2013). Nematode-trapping fungi eavesdrop on nematode pheromones.  Curr Biol. 2013 Jan 7;23(1):83-6. doi: 10.1016/j.cub.2012.11.035. Epub 2012 Dec 13. PubMed PMID: 23246407.

Choe A., Chuman T., von Reuss S.H., Dossey A.T., Yim J.J,. Ajredini .R, Kolawa A.A., Kaplan F., Alborn H.T., Teal P.E., Schroeder F.C., Sternberg P.W., Edison A.S. Sex-specific mating pheromones in the nematode Panagrellus redivivus. Proc Natl Acad Sci U S A. 2012 Dec 18;109(51):20949-54. doi: 10.1073/pnas.1218302109. Epub 2012 Dec 3. PubMed PMID: 23213209; PubMed Central PMCID: PMC3529029.

Mangiola, S., Young, N.D., Korhonen, P., Mondal, A., Scheerlinck, J.P., Sternberg, P.W., Cantacessi, C., Hall, R..S, Jex, A.R., Gasser, R.B. (2013) Getting the most out of parasitic helminth transcriptomes using HelmDB: implications for biology and biotechnology. Biotechnol Adv. 2012 Dec 21. doi:pii: S0734-9750(12)00197-8. 10.1016/j.biotechadv.2012.12.004. [Epub ahead of print] PMID: 23266393.

Robinson, C. P. Schwarz, E. M. and Sternberg, P. W. (2013). Identification of DVA interneuron regulatory sequences in Caenorhabditis elegans. PLoS One. 2013;8(1):e54971. doi: 10.1371/journal.pone.0054971. Epub 2013 Jan 28. PMID: 23383017; PMCID: PMC3557239

Srinivasan, J., Dillman, A. R., Macchietto, M. G., Heikkinen, L., Lakso, M. Fracchia, K. M., Antoshechkin, I., Mortazavi, A., Wong, G., and Sternberg, P.W. (2013) The draft genome and transcriptome of Panagrellus redivivus are shaped by the harsh demands of a free-living lifestyle. Genetics 193:1279-1295. PMID:  23410827; PMCID: PMC3606103.

Dillman, A.R., Minor, P.J., Sternberg, P.W. Origin and evolution of dishevelled. G3 (Bethesda). 2013 Feb;3(2):251-62. doi: 10.1534/g3.112.005314. Epub 2013 Feb 1. PMID: 23390601.

Artyukhin, A. B., Yim, J. J., Srinivasan, J., Izrayelit, Y., Bose, N., von Reuss, S. H., Jo, Y., Jordan, J. M., Baugh, L. R., Cheong, M., Sternberg, P. W., Avery, L., and Schroeder, F. C. (2013). Succinylated octopamine ascarosides and a new pathway of biogenic amine metabolism in C. elegans.  J Biol Chem. 2013 Jun 28;288(26):18778-83. doi: 10.1074/jbc.C113.477000. PMID: 23689506.

Hsueh, Y.-P., Leighton, D. H. W., and Sternberg, P. W. (2013).  Nematode Communication.  In Witzany, G., ed,. Biocommunication of Animals.  Springer. In press.

Minor, P. J., He, T.-F., Soh, C. H., Asthagiri, A. R., and Sternberg, P. W. (2013).  FGF signaling regulates Wnt ligand expression to control vulval cell lineage polarity in C. elegans. Development, in press.

Yu, H., Aleman-Meza, B., Gharib, S., Labocha, M.K., Cronin, C.J., Sternberg, P.W., Zhong, W. Systematic profiling of Caenorhabditis elegans locomotive behaviors reveals additional components in G-protein Gαq signaling. Proc Natl Acad Sci U S A. 110(29):11940-11945 PMID: 23818641.  

Ansell, B.R., Schnyder, M., Deplazes, P., Korhonen, P.K., Young, N.D., Hall, R.S., Mangiola, S, Boag, P.R., Hofmann, A., Sternberg, P.W., Jex, A.R., Gasser, R.B. Insights into theimmuno-molecular biology of Angiostrongylus vasorum through transcriptomics –prospects for new interventions. Biotechnol Adv. 2013 Jul 26. doi:pii:S0734-9750(13)00120-1. 10.1016/j.biotechadv.2013.07.006. [Epub ahead of print] PMID: 23895945.

Bai, X., Adams, B.J., Ciche, T.A., Clifton, S., Gaugler, R., Kim, K.S., Spieth, J., Sternberg, P.W., Wilson, R.K, Grewa,l P.S. (2013). A Lover and a Fighter: The Genome Sequence of an Entomopathogenic Nematode Heterorhabditis bacteriophora. PLoS One. 2013 Jul18;8(7):e69618. doi: 10.1371/journal.pone.0069618. PMID:23874975; PMCID: PMC3715494.

Schwarz, E.M., Korhonen, P. K., Campbell, B.E., Young, N. D., Jex, A. R., Jabbar, A., Hall, R. S., Mondal, A., Howe, A.C., Pell, J.,  Hofmann, A., Boag, P. R., Zhu, X.-Q., Gregory, T. R., Loukasg, A., Williams, B. A., Antoshechkin, I., Brown, C. T., Sternberg, P. W., and Gasser, R. B. (2013). The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus. Genome Biology, in press.


Johnston M, Andrews BJ, Hawley RS, Sternberg PW, Hieter P, Schedl T. G3,GENETICS, and the GSA: Two Journals, One Mission. Genetics 189(1):1-2. PubMed PMID: 21908741; PubMed Central PMCID: PMC3176113.

von Reuss, S.,  Bose, N., Srinivasan, J., Yim, J., Sternberg, P.,  and Schroeder, F.  (2012). Comparative metabolomics reveals biogenesis of C. elegans ascarosides, a modular library of small molecule signals. J. Am. Chem. Soc. 134(3):1817-24. Epub 2012 Jan 12. PMID: 22239548; PMC3269134.

Srinivasan, J., von Reuss, S.H., Bose, N., Zaslaver, A., Mahanti, P., Ho, M.C., O’Doherty, O. Edison, A. S. Sternberg, P.W. and Schroeder, F. C. (2012).  A modular library of chemical signals regulates social behaviors in Caenorhabditis elegans. PLoS-Biology 10(1):e1001237. PMID: 22253572. PMCID:PMC3254649

Dillman, A. R., Chaston, J. M., Adams, B. J., Ciche, T. A., Goodrich-Blair, H., Stock, S. P., and Sternberg, P. W.  (2012). An entomopathogenic nematode by any other name. PLoS-Pathogens 8(3)e1002527.

Fang, R., Schindelman, G., Van Auken, K., Fernandes, J., Chen, W., Wang, X., Davis, P., Tuli, M. A., Marygold, S.J., Millburn, G., Matthews, B., Zhang, H., Brown, N., Gelbart, W. M., and Sternberg, P. W. (2012). Automatic categorization of diverse experimental information in the bioscience literature. BMC Bioinformatics 13(1):16. PMID: 22280404.

Bandrowski, A.E., Cachat, J., Li, Y, Müller, H.M., Sternberg, P.W., Ciccarese, P., Clark, T., Marenco, .L, Wang, R., Astakhov, V., Grethe, J.S., Martone, M.E. (2012). A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework. Database (Oxford). 2012 Mar 20;2012:bas005.

Schwartz, H. T., Antoshechkin, I., and Sternberg, P. W. (2012). Applications of high-throughput sequencing to symbiotic nematodes of the genus Heterorhabditis.  Symbiosis, in press.

Howe, K., Davis, P., Paulini, M., Tuli, M. A., Williams, G., Yook, K., Durbin, R., Kersey, P. and Sternberg, P. (2012). WormBase: Annotating many nematode genomes. Worm 1:15-21.

Schaedel, O. N., Gerisch, B., Antebi, A., and Sternberg, P.W. (2012). Hormonal signal amplification mediates environmental conditions during development and controls an irreversible commitment to adulthood.  PLoS Biol. 2012 Apr;10(4):e1001306. Epub 2012 Apr 10. PMID: 22505848

Kroetz, S.M., Srinivasan, J., Yaghoobian, J., Sternberg, P.W. Hong, R.L. (2012). cGMP signaling and food quality affect feeding behavior in the necromenic nematode Pristionchus pacificus. PLoS One. 2012;7(4):e34464. Epub 2012 Apr 26.PMID:22563372

Murfin, K. E., Dillman, A. R., Foster, J. M., Bulgheresi, S., Slatko, B. E., Sternberg, P. W., and Goodrich-Blair, H. (2012).  Nematode-bacterium symbioses - cooperation and conflict revealed in the 'omics' age. Biol Bull. 223(1):85-102. PubMed PMID: 22983035.

Choe, A., von Reuss, S.H., Kogan, D., Gasser, R. B., Platzer, E. G., Schroeder, F. C., and Sternberg, P.W. (2012). Ascaroside signaling is widely conserved among nematodes.  Curr Biol. 2012 May 8;22(9):772-80. Epub 2012 Apr 12.PMID:22503501.

Dillman, A. R. and Sternberg. P. W. (2012). Quick guide: entomopathogenic nematodes. Curr Biol. 2012 Jun 5;22(11):R430-1.

Kuntz, S. G., Williams, B. A., Sternberg, P. W., Wold, B. J. (2012). Transcription factor redundancy and tissue specific regulation: evidence from functional and physical network connectivity.  Genome Res. 2012 Oct;22(10):1907-19. doi: 10.1101/gr.133306.111. PubMed PMID: 22730465. PMCID:PMC3460186

Izrayelit, Y., Srinivasan, J., Sternberg, P.W., and Schroeder, F. (2012). Targeted metabolomics reveals a male pheromone and sex-specific ascaroside biosynthesis in C. elegans.  ACS Chem Biol. 2012 Jun 12. PubMed PMID: 22662967.

Dillman, A. R., Mortazavi, A. and Sternberg. P. W. (2012).  Incorporating genomics into the toolkit of nematology.  J. Nematology 44(2):191-205. PMID: 23482088; PMCID: PMC3578471

Dillman, A.R., Guillermin, M.L., Lee, J.H., Kim, B., Sternberg, P.W., and Hallem, E.A.. (2012). Olfaction shapes host-parasite interactions in parasitic nematodes. Proc Natl Acad Sci U S  A. 2012 Jul 31. PubMed PMID: 22851767. 

Gupta, B. P, Hanna-Rose, W. and Sternberg, P. W. (2012).  Morphogenesis of the vulva and the vulva-uterine connection.  WormBook, ed. The C. elegans Research Community, WormBook, doi/10.1895/wormbook.1.152.1,

Feeny, B. F., Cronin, C. J., Sternberg, P. W., and Coppola, C. A. (2012). Complex orthogonal decomposition applied to nematode posturing. J. Comp. Nonlinear Dynamics 8(4), 041010 (May 14 2013); doi: 10.1115/1.4023548

Schwarz, E. M., Kato, M. and Sternberg, P. W. (2012). Functional transcriptomics of a migrating cell in Caenorhabditis elegans.  Proc Natl. Acad. USA 109:16246-51. doi: 10.1073/pnas.1203045109. PMID:22991463

Van Auken K., Fey P., Berardini T.Z., Dodson R., Cooper L., Li D., Chan J., Li Y., Basu S., Muller H.M., Chisholm R., Huala E., Sternberg P.W. and the WormBase Consortium. Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR. Database (Oxford). 2012 Nov 17;2012(0):bas040. Print 2012. PubMed PMID: 23160413; PubMed Central PMCID: PMC3500519.

Pang, S., Han, C., Kato, M., Sternberg, P. W., and Yang, C. (2012). Wide and scalable field-of-view Talbot-grid-based fluorescence microscopy. Opt Lett. 2012 Dec 1;37(23):5018-20. doi: 10.1364/OL.37.005018. PubMed PMID: 23202123.

Yook, K., Harris, T. W., Bieri, T., Cabunoc, A., Chan, J.,. Chen, W.J., Davis, P., de la Cruz, N., Duong, A., Fang, R., Ganesan, U., Grove, C., Howe, K., Kadam, S., Kishore, R., Lee, R., Li, Y., Muller, H.-M., Nakamura, C., Nash, B., Ozersky, P., Paulini, M., Raciti, D., Rangarajan, A., Schindelman, G., Shi, X., Schwarz, E.M., Tuli, M.A., Van Auken, K., Wang, D., Wang, X., Williams, G., Hodgkin, J., Berriman, M., Durbin, R., Kersey, P., Spieth, J., Stein, L., Sternberg, P.W. (2012).
 WormBase 2012: more genomes, more data, new website. 
Nucleic Acids Research, 40(D1):D735-D741. Epub 2011 Nov 8. PubMed PMID:22067452; PubMed Central PMCID: PMC3245152.  doi: 10.1093/nar/gkr95


Jex, A. R., Li, B., Young, N. D., Hall, R. S., Yang, L., Liu, S., Xun, X., Xiong, Z., Chen, F., Wu, X., Zhou, G., Fan, X., Campbell, B. E., Cantacessi, C. Schwarz, E. M. Ranganathan, S., Geldhof, P., Nejsum, P., Sternberg, P. W., Wang, J. Yang, H.  and Gasser, R. B. (2011).  The Ascaris suum genome. Nature. 2011 Oct 26;479(7374):529-33. doi: 10.1038/nature10553.. PMID:22031327.

Zaslaver, A., Baugh, L. R. and Sternberg. P. W. (2011). Metazoan operons accelerate recovery from growth arrested states. Cell 145(6):981-92. PMID: 21663799. 

Narayan, A., Laurent, G., and Sternberg, P.W. (2011). Transfer characteristics of a thermosensory synapse in Caenorhabditis elegans. Proc Natl Acad Sci U S A. 108:9667-72. PMID: 21606366; PMCID: PMC3111291.

Rangarajan, A., Schedl, T., Yook, K., Chan, J., Haenel, S., Otis, L., Faelten, S., DePellegrin-Connelly, T., Isaacson, R., Skrzypek,
Marygold, S. J., Stefancsik, R., Skrzypek,, M.S. Cherry, J. M., Sternberg, P. W., and Müller, H.-M. (2011).  Toward an interactive article: integrating journals and biological databases. BMC Bioinformatics 12:175  doi: 10.1186/1471-2105-12-175.

Schindelman, G., Fernandes, J. S., Bastiani, C. A., Yook, K.  and Sternberg. P. W. (2011). Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community.  BMC Bioinformatics 12:32. doi:10.1186/1471-2105-12-32. PMCID: PMC3039574

Baugh, L.R., Kurhanewicz, N., and Sternberg, P.W. (2011). Sensitive and precise quantification of insulin-like mRNA expression in Caenorhabditis elegans. PLoS One 6(3):e18086. PMID: 21445366; PMCID: PMC3062572.  

Kaplan, F., Srinivasan, J., Mahanti, P., Ajredini, R., Durak, O., Nimalendran, R., Sternberg, P.W., Teal, P.E., Schroeder, F.C., Edison, A.S., Alborn, H.T. (2011). Ascaroside expression in Caenorhabditis elegans is strongly dependent on diet and developmental stage.  PLoS One 6(3):e17804. PMID: 21423575; PMCID: PMC3058051. 

Chung, K., Zhan, M., Srinivasan, J., Sternberg, P. W., Gong, E., Schroeder, F., and Lu, H. (2011). Microfluidic chamber arrays for whole-organism high-throughput chemical screening.   Lab Chip. 2011 Nov 7;11(21):3689-97. Epub 2011 Sep 20.
PubMed PMID: 21935539.

Yook, K., Harris, T. W., Bieri, T., Cabunoc, A., Chan, J.,. Chen, W.J., Davis, P., de la Cruz, N., Duong, A., Fang, R., Ganesan, U., Grove, C., Howe, K., Kadam, S., Kishore, R., Lee, R., Li, Y., Muller, H.-M., Nakamura, C., Nash, B., Ozersky, P., Paulini, M., Raciti, D., Rangarajan, A., Schindelman, G., Shi, X., Schwarz, E.M., Tuli, M.A., Van Auken, K., Wang, D., Wang, X., Williams, G., Hodgkin, J., Berriman, M., Durbin, R., Kersey, P., Spieth, J., Stein, L., Sternberg, P.W. (2012).
 WormBase 2012: more genomes, more data, new website. 
Nucleic Acids Research 2011, doi: 10.1093/nar/gkr95

Johnston M, Andrews BJ, Hawley RS, Sternberg PW, Hieter P, Schedl T. G3, GENETICS, and the GSA: Two Journals, One Mission. Genetics 189(1):1-2. PubMed PMID: 21908741; PubMed Central PMCID: PMC3176113.


Hu, M., He, L., Campbell, B.E., Zhong, W., Sternberg, P.W., and Gasser, R.B. (2010). A vacuolar-type proton (H(+)) translocating ATPase alpha subunit encoded by the Hc-vha-6 gene of Haemonchus contortus. Mol. Cell. Probes [Epub ahead of print] PubMed PMID: 20362051.

Hu, M., Lok, J.B., Ranjit, N., Massey, H.C., Jr., Sternberg, P.W., and Gasser, R.B. (2010). Structural and functional characterisation of the fork head transcription factor-encoding gene, Hc-daf-16, from the parasitic nematode Haemonchus contortus (Strongylida). Int. J. Parasitol. 40, 405-415.

Pang, S., Cui, X., DeModena, J., Wang, Y.M., Sternberg, P., and Yang, C. (2010). Implementation of acolor-capable optofluidic microscope on a RGB CMOS color sensor chip substrate. Lab Chip 10, 411-414.

Rivard, L., Srinivasan, J., Stone, A., Ochoa, S., Sternberg, P.W., and Loer, C.M. (2010) A comparison of experience-dependent locomotory behaviors and biogenic amine neurons in nematode relatives of Caenorhabditis elegans. BMC Neurosci. 11, 22.

Inoue, T. and Sternberg, P.W. (2010). C. elegans BED domain transcription factor BED-3 controls lineage-specific cell proliferation during organogenesis. Dev. Biol. 338, 226-236.

Hu, M., Zhong, W., Campbell, B.E., Sternberg, P.W., Pellegrino, M.W., and Gasser, R.B. (2010). Elucidating ANTs in worms using genomic and bioinformatic tools -- biotechnological prospects? Biotechnol Adv. 28, 49-60.

Gene Ontology Consortium (2010). The Gene Ontology in 2010: extensions and refinements. Nucleic Acids Res. 38, D331-D335.

Harris, T.W., Antoshechkin, I., Bieri, T., Blasiar, D., Chan, J., Chen, W.J., De La Cruz, N., Davis, P., Duesbury, M., Fang, R., Fernandes, J., Han, M., Kishore, R., Lee, R., Mülle,r .H., Nakamura, C., Ozersky, P., Petcherski, A., Rangarajan, A., Rogers, A., Schindelman, G., Schwarz, E.M., Tuli, M.A., Van Auken, K., Wang, D., Wang, X., Williams, G., Yook, K., Durbin, R., Stein, L.D., Spieth, J., and Sternberg, P.W. (2010). WormBase: a comprehensive resource for nematode research. Nucleic Acids Res. 38, D463-D467. WormBase


Seah A, Sternberg PW. The roles of EGF and Wnt signaling during patterning of the C. elegans Bgamma/delta Equivalence Group. BMC Dev Biol. 2009 Dec 31;9:74.

Adhikari BN, Lin CY, Bai X, Ciche TA, Grewal PS, Dillman AR, Chaston JM, Shapiro-Ilan DI, Bilgrami AL, Gaugler R, Sternberg PW, Adams BJ. Transcriptional profiling of trait deterioration in the insect pathogenic nematode Heterorhabditis bacteriophora. BMC Genomics. 2009 Dec 15;10:609.

Kato M, Sternberg PW. The C. elegans tailless/Tlx homolog nhr-67 regulates a stage-specific program of linker cell migration in male gonadogenesis. Development. 2009 Dec;136(23):3907-15.

Klerkx EP, Alarcón P, Waters K, Reinke V, Sternberg PW, Askjaer P. Proteinkinase VRK-1 regulates cell invasion and EGL-17/FGF signaling in Caenorhabditis elegans. Dev Biol. 2009 Nov 1;335(1):12-21.

Cantacessi C, Zou FC, Hall RS, Zhong W, Jex AR, Campbell BE, Ranganathan S, Sternberg PW, Zhu XQ, Gasser RB. Bioinformatic analysis of abundant, gender-enriched transcripts of adult Ascaris suum (Nematoda) using a semi-automated workflow platform. Mol Cell Probes. 2009 Oct;23(5):205-17.

Broitman-Maduro G, Owraghi M, Hung WW, Kuntz S, Sternberg PW, Maduro MF. The NK-2 class homeodomain factor CEH-51 and the T-box factor TBX-35 have overlapping function in C. elegans mesoderm development. Development. 2009 Aug;136(16):2735-46.

Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW. Semi-automatedcuration of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation. BMC Bioinformatics. 2009 Jul 21;10:228.

Cantacessi C, Campbell BE, Visser A, Geldhof P, Nolan MJ, Nisbet AJ, Matthews JB, Loukas A, Hofmann A, Otranto D, Sternberg PW, Gasser RB. A portrait of the "SCP/TAPS" proteins of eukaryotes -- developing a framework for fundamental research and biotechnological outcomes. Biotechnol Adv. 2009 Jul-Aug;27(4):376-88.

Reference Genome Group of the Gene Ontology Consortium. The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species. PLoS Comput Biol. 2009 Jul;5(7):e1000431.

Whittaker AJ, Sternberg PW. Coordination of opposing sex-specific and core muscle groups regulates male tail posture during Caenorhabditis elegans male mating behavior. BMC Biol. 2009 Jun 22;7:33.

Pungaliya C, Srinivasan J, Fox BW, Malik RU, Ludewig AH, Sternberg PW, Schroeder FC. A shortcut to identifying small molecule signals that regulate behavior and development in Caenorhabditis elegans. Proc Natl Acad Sci U S A. 2009 May 12;106(19):7708-13.

Bai X, Adams BJ, Ciche TA, Clifton S, Gaugler R, Hogenhout SA, Spieth J, Sternberg PW, Wilson RK, Grewal PS. Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1. BMC Genomics. 2009 Apr 30;10:205.

Baugh LR, Demodena J, Sternberg PW. RNA Pol II accumulates at promoters of growth genes during developmental arrest. Science. 2009 Apr 3;324(5923):92-4.

Giurumescu CA, Sternberg PW, Asthagiri AR. Predicting phenotypic diversity and the underlying quantitative molecular transitions. PLoS Comput Biol. 2009 Apr;5(4):e1000354.

Yu H, Seah A, Herman MA, Ferguson EL, Horvitz HR, Sternberg PW. Wnt and EGF pathways act together to induce C. elegans male hook development. Dev Biol. 2009 Mar 15;327(2):419-32.

Cantacessi C, Loukas A, Campbell BE, Mulvenna J, Ong EK, Zhong W, Sternberg PW, Otranto D, Gasser RB. Exploring transcriptional conservation between Ancylostoma caninum and Haemonchus contortus by oligonucleotide microarray and bioinformatic analyses. Mol Cell Probes. 2009 Feb;23(1):1-9.

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