[1] (with Boju Jiang and Shicheng Wang), 3–Manifolds that admit knotted solenoids as attractors, Trans. Amer. Math. Soc. 356 (2004), no. 11, 4371–4382.
[2] (with Boju Jiang, Shicheng Wang and Qing Zhou), Embedding infinite cyclic covers of knot spaces into 3–space, Topology 45 (2006), no. 4, 691–705.
[3] Uniqueness of PL minimal surfaces, Acta Math. Sin. (Engl. Ser.) 23 (2007), no. 6, 961–964.
[4] (with Michel Boileau and Shicheng Wang), Pseudo-Anosov extensions and degree one maps between hyperbolic surface bundles, Math. Z. 256 (2007), 913–923.
[5] Sutured Heegaard diagrams for knots, Algebr. Geom. Topol. 6 (2006), 513–537 (electronic).
[6] A note on knot Floer homology of links, Geom. Topol. 10 (2006), 695–713 (electronic).
[7] Link Floer homology detects the Thurston norm, Geom. Topol. 13 (2009), 2991–3019 (electronic).
[8] Knot Floer homology detects fibred knots, Invent. Math. 170 (2007), no. 3, 577–608. Erratum, Invent. Math. 177 (2009), no. 1, 235–238. (PhD Thesis)
[9] Heegaard Floer homology and fibred 3–manifolds, Amer. J. of Math. 131 (2009), 1047–1063.
[10] Dehn surgeries that yield fibred 3–manifolds, Math. Ann. 344 (2009), no. 4, 863–876.
[11] (with Michel Boileau and Shicheng Wang), On standard forms of 1–dominations between knots with same Gromov volumes, Commun. Contemp. Math. 10 (2008), no. 1 supp., 857–870.
[12] Closed 3–braids are nearly fibred, J. Knot Theory Ramifications 18 (2009), no. 12, 1637–1649.
[13] (with Yinghua Ai), Two applications of twisted Floer homology, Int. Math. Res. Not. 2009 (2009), no. 19, 3726–3746.
[14] (with Matthew Hedden) Manifolds with small Heegaard Floer ranks, Geom. Topol. 14 (2010), 1479–1501.
[15] Thurston norm and cosmetic surgeries, Low-dimensional and Symplectic Topology, Proceedings of Symposia in Pure Mathematics, vol. 82, Amer. Math. Soc., Providence, RI, (2011), 53–63.
[16] Dehn surgeries on knots in product manifolds, J. Topol. 4 (2011), no. 4, 799–816.
[17] (with Yi Liu, Hongbin Sun and Shicheng Wang) On slope genera of knotted tori in the 4–space, Pacific J. Math. 261 (2013), no. 1, 117–144.
[18] Non-separating spheres and twisted Heegaard Floer homology, Algebr. Geom. Topol. 13 (2013), no. 2, 1143–1159.
[19] (with Matthew Hedden) Khovanov module and the detection of unlinks, Geom. Topol. 17 (2013), 3027–3076.
[20] Some applications of Gabai’s internal hierarchy, Adv. Math. 250 (2014), 467–495.
[21] (with Xingru Zhang) Characterizing slopes for torus knots, Algebr. Geom. Topol. 14 (2014), 1249–1274.
[22] (with Tian-Jun Li) Virtual Betti numbers and virtual symplecticity of 4-dimensional mapping tori, Math. Z. 277 (2014), 195–208.
[23] (with Zhongtao Wu) Heegaard Floer correction terms and rational genus bounds, Adv. Math. 267 (2014), 360–380.
[24] Homological actions on sutured Floer homology, Math. Res. Lett. 21 (2014), no. 5, 1177–1197.
[25] (With J. Elisenda Grigsby) Sutured Khovanov homology distinguishes braids from other tangles, Math. Res. Lett., 21 (2014), no. 6, 1263–1275.
[26] (With Zhongtao Wu) Cosmetic surgeries on knots in S3, J. Reine Angew. Math. 706 (2015), 1–17.
[27] (with Zhongtao Wu) Correction terms, ℤ2–Thurston norm, and triangulations, Topology Appl. 194 (2015), 409–426.
[28] (with Eileen Li) Half-integral finite surgeries on knots in S3, Ann. Fac. Sci. Toulouse Math. (6) 24 (2015), no. 5, 1157–1178.
[29] (with Xingru Zhang) Detection of knots and a cabling formula for A-polynomials, Algebr. Geom. Topol. 17 (2017), 65–109.
[30] Fintushel–Stern knot surgery in torus bundles, J. Topol. 10 (2017), no. 1, 164–177.
[31] Virtual Betti numbers and virtual symplecticity of 4-dimensional mapping tori, II, Sci. China Math. 60 (2017), 1591–1598.
[32] (with Xingru Zhang) Finite Dehn surgeries on knots in S3, Algebr. Geom. Topol. 18 (2018), 441–492.
[33] (with Faramarz Vafaee) Null surgery on knots in L-spaces, Trans. Amer. Math. Soc. 372 (2019), no. 12, 8279–8306.
[34] (with Joshua Greene) Non-simple genus minimizers in lens spaces, to appear Algebr. Geom. Topol.
[35] (with Xingru Zhang) Dehn surgery on knots in S3 producing Nil Seifert fibred spaces, What’s next?, 244–258, Ann. of Math. Stud., 205, Princeton Univ. Press, Princeton, NJ, [2020].
[36] (with William Ballinger, Chloe Ching-Yun Hsu, Wyatt Mackey, Tynan Ochse, and Faramarz Vafaee) The prism manifold realization problem, Algebr. Geom. Topol. 20 (2020), no. 2, 757–816.
[37] (with William Ballinger, Tynan Ochse, and Faramarz Vafaee) The prism manifold realization problem II, Comm. Anal. Geom. 29 (2021), no. 6, 1279–1334.
[38] A characterization of T2g+1,2 among alternating knots, Acta Math. Sin. (Engl. Ser.), 37 (2021), no. 12, 1841–1846.
[39] The next-to-top term in knot Floer homology, Quantum Topol. 13 (2022), no. 3, 579–591.
[40] (with William Ballinger, Tynan Ochse, and Faramarz Vafaee) The prism manifold realization problem III, Proc. Lond. Math. Soc. (3) 125 (2022), no. 3, 841–878.
[41] (with Chao Wang, and Shicheng Wang) Extending periodic automorphisms of surfaces to 3-manifolds, to appear Comm. Anal. Geom.
[42] A note on knot Floer homology and fixed points of monodromy, Peking Math. J. 6 (2023), no. 2, 635–643.
[43] Null-homotopic knots have Property R, Math. Proc. Cambridge Philos. Soc. 175 (2023), no. 1, 217–223.
[44] (with Xingru Zhang) Characterizing slopes for torus knots, II, J. Knot Theory Ramifications 32 (2023), no. 3, Paper No. 2350023, 13 pp.
[45] Property G and the 4–genus, to appear Trans. Amer. Math. Soc. Ser. B.
[1] Addendum to: “Knots, sutures and excision”, unpublished manuscript.
[2] Exceptional surgeries on hyperbolic fibered knots, submitted.
[3] Knot Floer homology and fixed points, submitted.
[4] (with John Baldwin and Steven Sivek) Floer homology and right-veering monodromy, submitted.