Gene Expression Pattern Comparison:
"LSK" (progenitor-like bone marrow cells) versus Cells of five DN Stages

Individual sample values for gene expression in LSK CD27- (stemcell like), LSK CD27+ (MPP-like), and DN subsets; Expression relative to GAPD
Gene 10LSK- 26LSK- 15LSK- 9LSK+ 25LSK+ 16LSK+ 15DN1 24DN1 DN1.MY 15DN2 24DN2 DN2.MY 15DN3a 24DN3a DN3a.MY 24DN3b 15DN3b DN3b.MY 15DN4 24DN4 DN4.MY 1PreM 2PreM 33preM 8ProB 21ProB 3ProB 11ProT 19ProT 20ProT
Bcl11a -1.43 -1.34 -1.35 -1.49 -1.43 -1.51 -1.46 -1.35 -1.96 -2.12 -2 -2.66 -2.64 -2.44 -2.54 -2.72 -3.01 -3.08 -3.62 -3.55 -3.52 -1.96 -2.21 -2.54 -1.21 -1.35 -1.38      
Bcl11b -5.22 -4.52 -5.7 -3.82 -4.21 -4.37 -4.52 -3.96 -1.85 -1.54 -1.68 -1.54 -1.37 -1.48 -1.47 -1.8 -1.96 -1.8 -1.82 -1.85 -1.85 -4.96 -6.15 -5.7 -5.7 -6.1 -5.15 -1.37 -0.89 -0.82
cMyb -0.89 -0.89 -0.96 -0.7 -0.8 -0.77 -0.41 -0.82 -0.74 -0.34 -0.57 -0.39 -0.36 -0.96 -0.23 -0.85 -0.55 -0.7 -0.96 -1.07 -1.11 -1.55 -1.34 -1.85 -0.59 -0.72 -0.85      
Deltex1 -5.22 -4.52 -5.7 -5.52 -5.7 -6 -3.19 -4.17 -4 -4.3 -4.3 -3.15 -2.34 -2.43 -2.17 -2.26 -2.64 -2.68 -3.21 -2.43 -2.46 -3.92 -4.62 -5.4 -4 -4.8 -5.15 -1.27 -1.02 -1.09
Dtx3L -4.48 -4.7 -4.23 -5.15 -3.89 -5.15 -4.15 -3.7 -4 -3.1 -3.92 -4 -2.92 -3 -3.51 -2.89 -4.7 -4 -4.7 -4.77 -4.12 -3.6 -4.27 -4.96 -3.64 -4.05 -4.19      
Eva1 -3.35 -4.22 -3.02 -4.42 -3.77 -3.85 -3.14 -3.46 -4 -2.25 -2.41 -1.77 -1.24 -1.32 -1.38 -2 -2.15 -2.22 -2.96 -2.55 -2.49 -3.77 -3.89 -3.74 -2.51 -2.85 -2.92      
Fkbp5 -2.1 -1.92 -2.11 -2.03 -1.96 -2 -1.85 -2 -2.02 -1.49 -1.96 -1.57 -1.09 -1.41   -1.39 -1.52 -1.54 -1.6 -1.66 -1.43 -2.21 -2.07 -2.36 -2.16 -2.27 -2.11      
GATA3 -2.96 -3.42 -2.68 -2.64 -2.33 -2.34 -1.82 -2.08 -1.77 -1.42 -1.6 -1.72 -1.32 -1.57 -1.38 -1.68 -1.74 -1.77 -1.72 -2 -1.7 -3.32 -3.29 -3.51 -3.19 -4.21 -3.08      
HEB-alt -2.96 -2.42 -2.72 -3.17 -2.96 -2.8 -2.96 -5.22 -4 -1.27 -1.32 -1.29 -1.07 -1.14 -1.22 -1.62 -1.77 -1.74 -2.33 -2.28 -2.15 -2.82 -3.64 -3.32 -1.89 -1.96 -2.47      
PU.1 -1.92 -1.82 -1.66 -1.38 -1.39 -1.33 -1.31 -1.57 -1.54 -1.85 -1.8 -2.26 -3.24 -3.01 -3.17 -4 -4.12 -4.7 -4.12 -5.52 -4.04 -0.59 -0.89 -0.89 -1.66 -2.02 -1.68      
Scl -2.41 -2.35 -2.26 -1.92 -1.92 -1.82 -2 -2.06 -2.31 -2.48 -2.57 -4 -4.7 -4.3 -5 -4.52 -5.52 -5 -6.15 -5.52 -6 -3.51 -3.46 -3.41 -3.44 -3.57 -2.82 -4 -3.7 -4
Zfp109 -2.77 -2.77 -2.74 -2.27 -2.14 -2.15 -1.89 -2.17 -4 -2.03 -2.13 -2.77 -1.96 -2.11 -2.17 -2.34 -2.48 -2.59 -2.25 -2.82 -2.72 -3.4 -3.07 -3.48 -2.8 -3 -2.96      
Zfp30 -4.2 -4.3 -3.77 -3.14 -2.96 -3.11 -3.42 -3.6   -3.59 -4.1   -3.46 -3.82   -4.52 -4.74   -4.54 -5.52   -5.05 -6.3 -5 -3.92 -4.06 -3.92 -3.4 -3.52 -3.52
Ddx19b -2.2 -1.89 -2.16 -1.96 -2.03 -2.06 -2.22 -2.33 -2.74 -1.92 -2.21 -2.2 -1.89 -1.96 -1.89 -2.11 -2.25 -2.26 -2.2 -2.59 -2.15 -2.82 -2.64 -3 -2.27 -2.23 -2.28 -1.7 -1.77 -1.74
Helz -2.37 -1.96 -2.22 -2.04 -2 -1.96 -1.72 -1.82 -1.62 -1.68 -1.74 -1.85 -1.48 -1.52 -1.47 -1.85 -1.96 -1.74 -1.82 -2.12 -1.89 -2.48 -2.51 -2.52 -1.96 -2.21 -2.39 -1.77 -1.66 -1.66
Tmem131 -1.66 -1.32 -1.43 -1.36 -1.41 -1.3 -0.96 -1.07     -0.96   -0.28 -0.34 -0.31 -0.85 -1.01   -1.07 -1.15   -1.32 -1.41 -1.24 -1.29 -1.44 -1.54      
Averages of log transformed values
Gene .LSK- .LSK+ .DN1. .DN2. .DN3a. .DN3b. .DN4. .PreM. .ProB.
Bcl11a -1.37 -1.48 -1.59 -2.26 -2.54 -2.96 -3.57 -2.24 -1.31
Bcl11b -5.15 -4.13 -3.47 -1.59 -1.44 -1.85 -1.85 -5.7 -5.7
cMyb -0.92 -0.74 -0.66 -0.43 -0.52 -0.7 -1.05 -1.59 -0.72
Deltex1 -5.15 -5.7 -3.74 -4 -2.31 -2.52 -2.7 -4.64 -4.66
Dtx3L -4.48 -4.72 -3.96 -3.7 -3.14 -3.85 -4.54 -4.28 -3.96
Eva1 -3.54 -4.02 -3.49 -2.14 -1.31 -2.12 -2.66 -3.8 -2.77
Fkbp5 -2.05 -2 -1.96 -1.68 -1.25 -1.48 -1.57 -2.21 -2.18
GATA3 -3.02 -2.44 -1.89 -1.59 -1.42 -1.72 -1.8 -3.38 -3.49
HEB-alt -2.7 -2.96 -4.05 -1.29 -1.14 -1.7 -2.25 -3.26 -2.1
PU.1 -1.8 -1.36 -1.47 -1.96 -3.14 -4.22 -4.55 -0.77 -1.8
Scl -2.34 -1.89 -2.12 -2.96 -4.52 -5 -6 -3.46 -3.28
Zfp109 -2.77 -2.18 -2.68 -2.31 -2.09 -2.47 -2.6 -3.31 -2.92
Zfp30 -4.1 -3.07 -3.51 -4 -3.64 -4.52 -5.05 -5.4 -3.96
Ddx19b -2.09 -2.02 -2.43 -2.11 -1.89 -2.21 -2.32 -2.82 -2.26
Helz -2.18 -2 -1.72 -1.77 -1.49 -1.85 -1.96 -2.51 -2.18
Tmem13 -1.47 -1.36 -1 -0.96 -0.31 -0.92 -1.11 -1.33 -1.43

Data from Tydell et al. 2007, The Journal of Immunology
No sample was run for the empty cells in the table