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2007-2006 Publications

 
  • Gao, F. and Davidson, E. H. Transfer of a large gene regulatory apparatus to a new developmental address in echinoid evolution. Proc. Natl. Acad. Sci. USA, in press.
  • Laubichler, M. D., and Davidson, E. H. Boveri's long experiment: Sea urchin merogones and the establishment of the role of nuclear chromosomes in development. Dev. Biol., in press.
  • Smith, J., Kraemer, E., Liu, H., Theodoris, C. and Davidson, E. H. A spatally dynamic cohort of regulatory genes in the endomesodermal gene network of the sea urchin embryo. Dev. Biol., in press.
  • Hinman, V. F., Nguyen, A. and Davidson, E. H. Caught in the evolutionary act: precise cis-regulatory basis of difference in organization of gene networks of sea stars and sea urchins. Dev. Biol., in press
  • Hinman, V. F. and Davidson, E. H. Evolutionary plasticity of developmental gene regulatory network architecture. Proc. Natl. Acad. Sci. USA, in press.
  • Smith, J., Theodoris, C. and Davidson, E. H. A gene regulatory network subcircuit drives a dynamic pattern of gene expression. Science 318, 794-797, 2007
  • Materna, S. C. and Davidson, E. H. Logic of gene regulatory networks. Curr. Opin. Biotechnol. 18, 351-354, 2007
  • Istrail, S., Ben-Tabou De-Leon, S. and Davidson, E. H. The regulatory genome and the computer. Dev. Biol. 310, 187-195, 2007
  • Revilla-i-Domingo, R., Oliveri, P. and Davidson, E .H. A missing link in the sea urchin embryo gene regulatory network: hesC and the double-negative specification of micromeres. Proc. Natl. Acad. Sci. USA 104, 12383-12388, 2007.
  • Materna, S.C. and Davidson, E.H. Logic of gene regulatory networks. Curr. Opin. Biotech 18, 1-4, 2007
  • Vokes, S.A., Ji, H.K., McCuine, S., Tenzen, T., Giles, S., Zhong, S., Longabaugh, W.J.R., Davidson, E.H., Wong, W. H., and McMahon, A. P. Genomic characterization of Gli-activator targets in sonic hedgehog-mediated neural patterning. Development 134, 1977-1989, 2007
  • Lee, P. Y., Nam, J. and Davidson, E. H. Exclusive developmental functions of gatae cis-regulatory modules in the Strongylocentrotus purpuratus embryo. Dev. Biol. 307, 434-445, 2007
  • Nam, J., Su, Y.-H., Lee, P.Y., Robertson, A.J., Coffman, J. A. and Davidson, E. H.. cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network. Dev.Biol., 306, 860-869, 2007
  • Oliveri, P. and Davidson, E. H. Built to run, not fail. Science 315, 1510-1511, 2007.
  • Livi, C. B. and Davidson, E. H.  Regulation of spblimp1/krox1a, an alternatively transcribed isoform expressed in midgut and hindgut of the sea urchin gastrula.  Gene Exp. Patterns 7, 1-7, 2007.
  • Ben-Tabou de-Leon, S. and Davidson, E. H.  Gene regulation:  Gene control network in development.  Ann. Rev. Biophys. Biomol. Struct. 36, 191-212, 2007.

2006 Publications

  • Davidson, E. H.  The Regulatory Genome.  Gene Regulatory Networks in Development and Evolution.  Academic Press/Elsevier, San Diego, 2006.
  • Davidson, E. H. and Erwin, D. H.  Gene regulatory networks and the evolution of animal body plans.  Science 311, 796-800, 2006.
  • Cameron, R. A., Rowen, L., Nesbitt, R., Bloom, S., Rast, J. P., Berney, K., Arenas-Mena, C., Martinez, P., Lucas, S., Richardson, P. M., Davidson, E. H., Peterson, K. J. and Hood, L.  Unusual gene order and organization of the sea urchin Hox cluster.  J. Exp. Zool. 306B, 45-58, 2006.
  • Livi, C. B. and Davidson, E. H.  Expression and function of blimp1/krox, an alternatively transcribed regulatory gene of the sea urchin endomesoderm network.  Dev. Biol. 293, 513-525, 2006.
  • Amore, G. and Davidson, E. H.  cis-Regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo.  Dev. Biol. 293, 555-564, 2006.
  • Chen, J.-Y., Bottjer, D. J., Davidson, E. H., Dornbos, S. Q., Gao, X., Yang, Y.H., Li, C.-W., Li, G., Wang, X.-Q., Xian, D.-C., Wu, H.-J., Kwu, Y.-K. and Tafforeau, P.  Phosphatized polar lobe-forming embryos from the Precambrian of Southwest China.  Science 312, 1644-1646, 2006.
  • Arenas-Mena, C., Cameron, R. A. and Davidson, E. H.  Hindgut specification and cell-adhesion functions of Sphox 11/13b in the endoderm of the sea urchin embryo.  Develop. Growth Differ. 48, 463-472. 2006.
  • Ransick, A. and Davidson, E. H.  cis-Regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification.  Dev. Biol. 297, 587-602, 2006.
  • Davidson, E. H.  Special issue:  The sea urchin genome.  Dev. Biol. 300, 1, 2006.
  • Howard-Ashby, M., Materna, S. C., Brown, C. T., Tu, Q., Oliveri, P., Cameron, R. A. and Davidson, E. H.  High regulatory gene use in sea urchin embryogenesis:  Implications for bilaterian development and evolution.  Dev. Biol. 300, 27-34, 2006.
  • Tu, Q., Brown, C. T., Davidson, E. H. and Oliveri, P.  Sea urchin forkhead gene family:  Phylogeny and embryonic expression.  Dev. Biol. 300, 49-62, 2006.
  • Howard-Ashby, M., Materna, S. C., Brown, C. T., Chen, L., Cameron, A. and Davidson, E. H.  Identification and characterization of homeobox transcription factor genes in S. purpuratus, and their expression in embryonic development.  Dev. Biol. 300, 74-89, 2006.
  • Howard-Ashby, M., Brown, C. T., Materna, S. C., Chen., L. and Davidson, E. H.  Gene families encoding transcription factors expressed in early development of Strongylocentrotus purpuratus.  Dev. Biol. 300, 90-107, 2006.
  • Materna, S. C., Howard-Ashby, M., Gray, R. F. and Davidson, E. H.  The C2H2 zinc finger genes of Strongylocentrotus purpuratus and their expression in embryonic development.  Dev. Biol. 300, 108-120, 2006.
  • Damle, S., Hanser, B., Davidson, E. H. and Fraser, S. E.  Confocal quantification of cis-regulatory reporter gene expression in living sea urchin.  Dev. Biol. 299, 543-550, 2006.
  • Oliveri, P., Walton, K. D., Davidson, E. H. and McClay, D. R.  Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo.  Development 133, 4173-4181, 2006.
  • Davidson, E. H.  The Sea Urchin Genome:  Where will it lead us?  Science 314, 939-940, 2006.
  • Bottjer, D. J., Davidson, E. H., Peterson, K. J. and Cameron, R. A.  Paleogenomics of echinoderms.  Science 314, 956-960, 2006
  • Samanta, M. P., Tongprasit, W., Istrail, S., Cameron, R. A., Tu, Q., Davidson, E. H. and Stolc, V.  The transcriptome of the sea urchin embryo.  Science 314, 960-962, 2006. Back to top