Publications

Journal Papers

[7] M. Liebling^∗, A.S. Forouhar^∗, R. Wolleschensky^∗, B. Zimmermann, R. Ankerhold, S.E. Fraser, M. Gharib, M.E. Dickinson, "Rapid Three-Dimensional Imaging and Analysis of the Beating Embryonic Heart Reveals Functional Changes During Development," Developmental Dynamics, vol. 235, iss. 11, pp. 2940-2948, November 2006.
^∗Contributed equally.
Supplemental material (movies).

[6] A. S. Forouhar, M. Liebling, A. Hickerson, A. Nasiraei-Moghaddam, H.-J. Tsai, J. R. Hove, S. E. Fraser, M. E. Dickinson, M. Gharib, "The Embryonic Vertebrate Heart Tube Is a Dynamic Suction Pump," Science, vol. 312, no. 5774, pp. 751-753, 2006.
Supplemental material (movies).

[5] M. Liebling, A. S. Forouhar, M. Gharib, S. E. Fraser, M. E. Dickinson, "Four-Dimensional Cardiac Imaging in Living Embryos via Postacquisition Synchronization of Nongated Slice Sequences," Journal of Biomedical Optics, vol. 10, no. 5, eid 054001, 10 pages, 2005.
Supplemental material (movies).

[4] M. Liebling, M. Unser, "Autofocus for Digital Fresnel Holograms by Use of a Fresnelet-Sparsity Criterion," Journal of the Optical Society of America A, vol. 21, no. 12, pp. 2424-2430, December 2004
Supplemental material (movies).

[3] M. Liebling, Th. Blu, M. Unser, "Complex-Wave Retrieval from a Single Off-Axis Hologram," Journal of the Optical Society of America A, vol. 21, no. 3, pp. 367-377, March 2004.

[2] M. Liebling, Th. Blu, M. Unser, "Fresnelets: New Multiresolution Wavelet Bases for Digital Holography," IEEE Transactions on Image Processing, vol. 12, no. 1, pp. 29-43, January 2003. Read a review on MathSciNet.

[1] S. Horbelt, M. Liebling, M. Unser, "Discretization of the Radon Transform and of Its Inverse by Spline Convolutions," IEEE Transactions on Medical Imaging, vol 21, no 4, pp. 363-376, April 2002.

Book Chapter

M. Liebling, "A Fresnelet Approach to Digital Holography," in New Directions in Holography and Speckles, C. Vikram, H. J. Caulfield, Editors, American Scientific Publishers, in press.

Conference Papers

[11] M. Liebling, "Robust Multiresolution Techniques for Image Reconstruction," invited paper, Proceedings of the SPIE Conference BiOS 2007, Photons Plus Ultrasound Imaging and Sensing 2007: The Eighth Conference on Biomedical Thermoacoustics, Optoacoustics, and Acousto-optics, San Jose CA, USA, January 20-25, 2007, vol. 6437, eid. 64371C, 4 pages.

[10] M. Liebling, J. Vermot, A.S. Forouhar, M. Gharib, M.E. Dickinson, S.E. Fraser, "Nonuniform temporal alignment of slice sequences for four-dimensional imaging of cyclically deforming embryonic structures," Proceedings of the 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano (ISBI'06), Arlington, VA, USA, April 6-9, 2006, pp. 1156-1159.
Supplemental material (movies).

[9] M. Liebling, M. Unser, "Comparing Algorithms for Reconstructing Digital off-Axis Fresnel Holograms," invited paper, Proceedings of the SPIE Conference on Three-Dimensional TV, Video, and Display IV, Boston CA, USA, October 23-26, 2005, vol. 6016, pp. 213-222.

[8] M. Liebling, A. S. Forouhar, M. Gharib, S. E. Fraser, and M. E. Dickinson, "Wavelet-based Synchronization of Nongated Confocal Microscopy Data for 4D Imaging of the Embryonic Heart," invited paper, Proceedings of the SPIE Conference Optics & Photonics, Wavelets XI, San Diego CA, USA, July 31-August 4, 2005, vol. 5914, eid 591409, 6 pages.

[7] M. Liebling, S. E. Fraser, "New Developments in Fast Confocal Microscopy Applied to Biological Systems, " in Atelier INSERM N° 161, La Londe-les-Maures, France, June 30-July 2, 2005

[6] M. Liebling, Th.-F. Bernhard, A. H. Bachmann, L. Froehly, Th. Lasser, M. Unser, "Continuous Wavelet Transform Ridge Extraction for Spectral Interferometry Imaging," Proceedings of the SPIE Conference BiOS 2005, Coherence domain optical methods and optical coherence tomography in biomedicine IX, San Jose CA, USA, January 22-27, 2005, vol. 5690, pp 397-402.

[5] M. Liebling, Th. Blu, M. Unser, "Non-Linear Fresnelet Approximation for Interference Term Suppression in Digital Holography," Proceedings of the SPIE Conference on Mathematical Imaging: Wavelet Applications in Signal and Image Processing X, San Diego CA, USA, August 3-8, 2003, vol. 5207, pp. 553-559.

[4] M. Liebling, Th. Blu, E. Cuche, P. Marquet, Ch. D. Depeursinge, M. Unser, "Local Amplitude and Phase Retrieval Method for Digital Holography Applied to Microscopy," Proceedings of the SPIE European Conference on Biomedical Optics: Novel Optical Instrumentation for Biomedical Applications (ECBO'03), Munich, Germany, June 22-25, 2003, vol. 5143, pp. 210-214.

[3] M. Liebling, Th. Blu, E. Cuche, P. Marquet, Ch. Depeursinge, M. Unser, "A Novel Non-Diffractive Reconstruction Method for Digital Holographic Microscopy," Proceedings of the First 2002 IEEE International Symposium on Biomedical Imaging: Macro to Nano (ISBI'02), Washington D.C., USA, July 7-10, 2002, vol. II, pp. 625-628.

[2] S. Horbelt, M. Liebling, M. Unser, "Filter Design for Filtered Back-Projection Guided by the Interpolation Model," Proceedings of the SPIE International Symposium on Medical Imaging: Image Processing, San Diego CA, USA, February 24-28, 2002, vol. 4684, Part II, pp. 806-813.

[1] M. Liebling, Th. Blu, M. Unser, "Fresnelets—A New Wavelet Basis for Digital Holography," Proceedings of the SPIE Conference on Mathematical Imaging: Wavelet Applications in Signal and Image Processing IX, San Diego CA, USA, July 29-August 1, 2001, vol. 4478, pp. 347-352.

Invited Talks at International Conferences

[10] M. Liebling, "Studying Embryonic Heart Development via Dynamic Imaging and Analysis," invited talk, BioImaging & Optics Platform Inauguration, EPFL, Switzerland, September 6-7, 2007.

[9] M. Liebling, "Dynamic 4D Imaging and Analysis of the Developing Embryonic Heart," invited talk, EMBO World Practical Course: "Imaging in 3-D and the F-techniques: FRET, FCS, FLIM and FRAP," 17-29 June 2007, Singapore.

[8] M. Liebling, "Follow that Beat: Dynamic Imaging and Analysis of the Developing Embryonic Heart," invited talk, 4th Advanced Optical Methods Workshop, University of California at Berkeley, USA, January 17-19, 2007 .

[7] M. Liebling, A.S. Forouhar, J. Vermot, M. Gharib, M.E. Dickinson, S.E. Fraser, "Dynamic Imaging and Analysis of Fast Cyclically Moving Embryonic Structures," invited talk, the 16th International Microscopy Congress, Sapporo, Japan, September 3-8, 2006.

[6] M. Liebling, "Dynamic Imaging of Cyclically Moving Embryonic Structures: Combining Fast Confocal Microscopes and Wavelet-Based Reconstruction Techniques," invited talk, Bernoulli Center Research Seminar Series, EPFL, Lausanne, Switzerland, March 16, 2006.

[5] M. Liebling, "Imaging the Developing Embryonic Heart: Combining Fast Confocal Microscopes with Four-Dimensional Reconstruction Techniques," invited talk, IPAM workshop, Heart Modeling: Image Acquisition, Segmentation, Modeling and Analysis, University of California Los Angeles, USA, February 6-10, 2006.

[4] M. Liebling, A. S. Forouhar, M. Gharib, S. E. Fraser, and M. E. Dickinson, "Dynamic visualization of the zebrafish heart: a combination of fast microscopes and 4D reconstruction techniques," invited talk, 28th Annual Meeting of the Molecular Biology Society of Japan, Fukuoka, Japan, December 7-11, 2005.

[3] M. Liebling, A. S. Forouhar, M. Gharib, S. E. Fraser, and M. E. Dickinson, "Volume Measurements in the Embryonic Zebrafish Heart using 4D Confocal Microscopy," invited talk, International Workshop on BioImage Data Mining and Informatics, Stanford, CA, USA, August 12, 2005.

[2] M. Liebling, "Fast Confocal Microscopy of the Embryonic Heart: Catching Up with the Fourth Dimension," Invited talk, Frontiers in Bio-Imaging, June 6-7, 2005, Basel, Switzerland.

[1] M. Liebling, "Algorithmic Aspects of Tomographic Reconstruction from Parallel and Diffracted Projections," Invited talk, Second Korean-Swiss Workshop on Novel Coherence-Based Radiology Techniques, Jeju-Do, Korea, February 19-22, 2003.

Other Seminars

[8] M. Liebling, "Fast Confocal Microscopy and Quantitative Analysis to Study Embryonic Heart Development," invited talk, Stowers Institute 3rd Annual Advanced Imaging Workshop, Stowers Institute for Medical Research, Kansas City, MO, 13-14 September, 2007

[7] M. Liebling, "Dynamic Imaging and Analysis of the Developing Embryonic Heart," The Scripps Research Institute, La Jolla, CA, May 5, 2007.

[6] M. Liebling, "Dynamic Computational Microscopy for In Vivo Imaging during Embryonic Heart Morphogenesis," Electrical and Computer Engineering Seminar, University of California Santa Barbara, CA, April 5, 2007.

[5] M. Liebling, "Studying the Developing Zebrafish Heart via Fast Dynamic Imaging and Analysis," 3rd Southern California Zebrafish Meeting, University of California San Diego, CA, February 16, 2007.

[4] M. Liebling, "Follow that Beat: Dynamic Imaging and Analysis of the Developing Embryonic Heart," BNMC Seminar Series on Computational Modeling in Biology, California Institute of Technology, Pasadena, CA, October 26, 2006.

[3] M. Liebling "Dynamic Imaging and Analysis of Fast Cyclically Moving Embryonic Structures," Iwate Medical University, Morioka, Japan, September 1, 2006.

[2] M. Liebling, "Dynamic Visualization of the Embryonic Zebrafish Heart: Combining Fast Microscopes with 4D Reconstruction Techniques," Tokyo University, Japan, December 22, 2005.

[1] M. Liebling, "On Fresnelets, Interference Fringes, and Digital Holography," Invited talk, Annual Meeting of the Swiss Society of Biomedical Engineering, ETH Zurich, Switzerland, September 2-3, 2004. PDF Slides (Compressed zip 5.7 Mb)

Conference Abstracts

[2] M. E. Dickinson, A. Forouhar, M. Liebling, S. E. Fraser, M. Gharib "Rapid acquisition of 4-dimensional image data from the developing heart," SPIE Conference BiOS 2005, Three-dimensional and multidimensional Microscopy: Image processing and acquisition XII, San Jose CA, USA, January 22-27, 2005.

[1] Ch. Depeursinge, E. Cuche, T. Colomb, P. Massatch, A. Marian, F. Montfort, M. Liebling, Th. Blu, M. Unser, P. Marquet, P. J. Magistretti, "Digital Holography Applied to Microscopy: A New Imaging Modality in the Sub-Wavelength Range," in Hundertvierte Jahrestagung der Deutschen Gesellschaft für angewandte Optik (DGaO), Münster (Westfalen), Germany, June 10-14, 2003.

Ph.D. Dissertation

M. Liebling, "On Fresnelets, Interference Fringes, and Digital Holography," Swiss Federal Institute of Technology Lausanne, EPFL Thesis no. 2977 (2004), 151 p., April 21, 2004.