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Hours
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Mon
and Wed 1:00-2:30 pm
Broad
100 Lecture Hall
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Lecture
schedule (updated 10/12)
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Sept
29
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Lecture
01: Basic optics (JC)
>download homework (due
Oct 01)
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Oct
01
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Lecture
02: Optics of real microscopes (JC)
>download
homework (due Oct 13)
note:
Imaris software presentation on Oct 03 (2-3pm in Broad 100)
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Oct
06
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Science
Writing Workshop with Steven Youra (Project 1)
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Oct
08
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Science
Writing Workshop with TA (Project 1)
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Oct
13
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Lecture
03: Widefield light microscopy (JC)
>download
homework (due Oct 22)
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Oct
15
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Lecture
04: Contrast techniques (JC)
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Oct
20
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Lecture
05: Fluorescent microscopy (JC)
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Oct
22
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Lecture
06: Electron Microscopy and Tomography (Grant
Jensen)
>download
homework (due Oct 31)
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Oct
27
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Lecture
07: Confocal microscopy I (JC)
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Oct
29
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Lecture
08: Confocal microscopy II (JC)
>download
the reading
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Nov
03
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Lecture
09: Multiphoton microscopy I (2PEF) (WS)
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Nov
05
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Lecture
10: Multiphoton microscopy II (SHG, THG, CARS) (WS)
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Nov
10
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Science
Writing Workshop with TA (Project 2)
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Nov
12
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Lecture
11: MRI and MR microscopy (Russ Jacobs)
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Nov
17
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Lecture
12: Motion and fast imaging (WS)
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Nov
19
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Lecture
13: Labeling and multi-spectral imaging (WS)
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Nov
24
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Lecture
14: Quantitative fluorescence microscopy (FLIM, FRET, FRAP, FCS)
(WS)
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Nov
26
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Lecture
15: Digital imaging I: image formation, visualization and processing
(WS)
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Dec
01
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Lecture
16: Digital imaging II: 3D-reconstruction, image restoration and
analysis (WS)
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Dec
03
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Lecture
17: Fluorescence nanoscopy (NSOM, TIRF, 4Pi, STED, nonlinear SIM,
STORM-PALM-FPALM) (WS)
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Reading
Projects
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Assignment
Schedule (updated 10/12)
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Reading
Project 1:
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Oct
06
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Look
for journal article (due Oct 13)
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Oct
13
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Write
draft (due Oct 20*)
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Oct
20
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Do
peer-review (due Oct 27*)
>download
the Peer-Review Comment Sheet
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Oct
27
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Write
final version of paper (due Oct 31)
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Reading
Project 2:
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Nov
10
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Look
for journal article (due Nov 17)
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Nov
17
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Write
draft (due Nov 24*)
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Nov
24
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Do
peer-review (due Dec 01*)
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Dec
01
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Write
final version of paper (due Dec 05**)
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*due
at beginning of class
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in TA mailbox
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Course
Work
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Reading
Simple
problem sets
Paper
reading project (2 per term)
No
mid-term of final exam
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Grading
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Grades
based on the Homework and the Projects.
Homework,
Project 1, Project 2 are given equal weight.
Late
homework assignements are not accepted.
Score
can be dropped with medical or Dean's excuse.
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Auditors
and non-traditional students
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Auditors
are welcome to take the Course, but are required to do the homework
problem sets and reading.
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Links
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Bi177
& Bi227 website
Microscope
Primer
Microscopy
from the Very Beginning (Zeiss)
Olympus
Microscopy Primer
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